PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012266-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 130aa    MW: 14491.4 Da    PI: 4.923
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012266-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.48.7e-53193193
                  NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
                           +++q+r++Pianvsrimkk lP nakisk+aketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGf++yveplk yl+ y
  SMil_00012266-RA_Salv  1 MKDQERVVPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFQNYVEPLKDYLTTY 90
                           589*************************************************************************************** PP

                  NF-YB 91 rel 93
                           r++
  SMil_00012266-RA_Salv 91 RDT 93
                           *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-48295IPR009072Histone-fold
SuperFamilySSF471133.57E-36497IPR009072Histone-fold
PfamPF008085.4E-27871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-193553No hitNo description
PROSITE patternPS0068503854IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-195472No hitNo description
PRINTSPR006151.8E-197391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MKDQERVVPI ANVSRIMKKS LPPNAKISKE AKETVQECVS EFISFVTGEA SDKCQREKRK  60
TINGDDLLWA MTTLGFQNYV EPLKDYLTTY RDTSPIDDQT KIATANPSFL QGFSSDGGGV  120
VIEFATSSWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-46192192Transcription factor HapC (Eurofung)
4g92_B8e-46192192Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342812.11e-54PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233104e-54NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A067F1F43e-54A0A067F1F4_CITSI; Uncharacterized protein
TrEMBLA0A067KTU33e-54A0A067KTU3_JATCU; Uncharacterized protein
STRINGGLYMA08G14931.12e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-55nuclear factor Y, subunit B3